Cytoscape

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization.


Abstract Algebra: Theory and Applications

The first half of the book presents group theory, through the Sylow theorems, with enough material for a semester-long course. The second-half is suitable for a second semester and presents rings, integral domains, Boolean algebras, vector spaces, and fields, concluding with Galois Theory.


Constructs Are Inside and Outside Your Head

“Psychic” objects are phenomenal objects. Phenomenal objects are ones that fit our intuitions of what we think about when we think of “mental” things. Broadly, they are things like concepts, intentionality, intuition, attention, awareness, perception, experience, consciousness, etc. A construct is anything that is an intentional arrangement of elements. This means that any thought that you intentionally think about is a construct because it is an intentional arrangement of experiences, intuitions, concepts, and other things of that nature. This implies that whenever you imagine something, you are technically creating a construct. Metaphysically, there is a question of how this construct Read More



What is a Psychic Construct?

This is a snippet of a conversation where I define psychic energy: …Any set of concepts and intentions that are extensions of those concepts can be treated as a tree and a tree is a type of graph. In other words, a semantic ontology can be created from a set of concepts where that ontology has a tree and that tree has a graph. Such a graph has an adjacency matrix and that adjacency matrix has a spectrum comprised of the eigenvalues of that matrix. The energy of the graph would be the sum of the absolute values of the Read More


Marvel and DC Styled Magic Binding Rings

I am a big consumer of science fiction and fantasy, and like all big sci-fi/fantasy geeks, I am into Marvel and DC. Psionic characters were okay to me, but they didn’t interest me too much. Besides the Darkover series written by Marion Zimmer Bradley, psionic characters don’t really pull me in. I am a big fan of the sorcerers of DC like Zatanna and Constantine. When it comes to Marvel, I am a big fan of Doctor Strange. In fact, DC has an animated movie called Justice League Dark and Doctor Strange has his own movie and own presence in Read More


Talisman of Focusing Rings Conceptual Fields, Atomic Concepts, and Energy Flow

So, this is a complex sorcerous talisman of mine. With talismans, the symbols act as conduits. The power comes from the entities (in this case psychic objects) associated with the representation. It’s a talisman of rings that defines a domain that acts as a loci for Experience, Perception, Awareness, Formation, Desire, and Fantasy so that psychic power resonates and is amplified. Those concepts comprise the nodes of the outer ring and the lines throughout the talisman are a mapping of the psychic forces from those concepts – it acts as a vector of psychic forces. Since this is also a Read More


The Power of Your Words: “Non-Magical” Languages Can be More Powerful than Magical Ones

I am a fan of the Dresden Files series. In the Dresden files, there is a branch of elemental battle (or Boom!) magic in the series called evocation magic. It is the creating magical bullet deflecting elemental shields of air, conjuring magical streams of fire, and telekinetic concussive blasts type. It is like the Destruction school of magic in Skyrim. Harry Dresden, the main character of the series, is particularly fond of Fire and Wind evocation spells. Evocation magic in the Dresden universe caught my attention in particular because I specialize in conjuration and evocation of forces albeit I am Read More


Gephi

Gephi is an open-source software for network visualization and analysis. It helps data analysts to intuitively reveal patterns and trends, highlight outliers and tells stories with their data. It uses a 3D render engine to display large graphs in real-time and to speed up the exploration. Gephi combines built-in functionalities and flexible architecture to: explore, analyze, spatialize, filter, cluster, manipulate, export. Gephi is based on a visualize-and-manipulate paradigm which allow any user to discover networks and data properties. Moreover, it is designed to follow the chain of a case study, from data file to nice printable maps.



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