Cytoscape

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization.


Evolution, Dynamical Systems and Markov Chains

In this post we present a high level introduction to evolution and to how we can use mathematical tools such as dynamical systems and Markov chains to model it. Questions about evolution then translate to questions about dynamical systems and Markov chains – some are easy to answer while others point to gaping holes in current techniques in algorithms and optimization.



The Presence of the Past: Morphic Resonance and the Memory of Nature

Rupert Sheldrake’s theory of morphic resonance challenges the fundamental assumptions of modern science. An accomplished biologist, Sheldrake proposes that all natural systems, from crystals to human society, inherit a collective memory that influences their form and behavior. Rather than being ruled by fixed laws, nature is essentially habitual.


Chaos, Creativity, and Cosmic Consciousness

In this book of “trialogues,” the late psychedelic visionary and shamanologist Terence McKenna, acclaimed biologist and originator of the morphogenetic fields theory Rupert Sheldrake, and mathematician and chaos theory scientist Ralph Abraham explore the relationships between chaos and creativity and their connection to cosmic consciousness. Their observations call into question our current views of reality, morality, and the nature of life in the universe.


New Science of Life

After rats at Harvard first escaped from a new kind of water maze, successive generations learned quicker and quicker. Then rats in Melbourne, Australia learned yet faster. Rats with no trained ancestors shared in this improvement. Rupert Sheldrake sees these processes as examples of morphic resonance. Past forms and activities of organisms, he argues, influence organisms in the present through direct connections across time and space.Individual plants and animals both draw upon and contribute to the collective memory of their species.




What is a Random Walk?

Random Walks are used in finance, computer science, psychology, biology and dozens of other scientific fields. They’re one of the most frequently used mathematical processes. So exactly what are Random Walks and how do they work?



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