Cytoscape

Cytoscape is an open source software platform for visualizing molecular interaction networks and biological pathways and integrating these networks with annotations, gene expression profiles and other state data. Although Cytoscape was originally designed for biological research, now it is a general platform for complex network analysis and visualization. Cytoscape core distribution provides a basic set of features for data integration, analysis, and visualization.


Sorcerous Alchemy: Creating Enchanted Crystals with Magic

When people refer to subtle energies, they tend to be referring to ethereal, ephemeral, and intangible things – things that have no concrete substance that you effectively hold in your hand. A lot of ideas about magic propose that it is facilitated by this ethereal and intangible thing. An intuitive concept of augmenting the attributes of something (enchanting it) is to take that ethereal substance, manipulate its properties, and anchor it in some way to something such that the physical object mediates ethereal properties so that it is augmented. This is effectively like painting or gilding an object. It does Read More


Magic is Sublime

Snippet from a Reddit conversation: I wrote: LordNyssa wrote: That’s why magick in any true sense, is and will always be personal. Magic is sublime or this is to say it is beyond you. You know how the night sky is sublime and is beyond you. Thinking about the night sky and vastness of space implies that you are very very tiny. My apartment is personal. In respect, the Earth isn’t. So, if there was a tornado or an earthquake, my poor little personal space would be rattled around or outright obliterated. Magic is sublime in that sense. Magic is Read More


Abstract Algebra: Theory and Applications

The first half of the book presents group theory, through the Sylow theorems, with enough material for a semester-long course. The second-half is suitable for a second semester and presents rings, integral domains, Boolean algebras, vector spaces, and fields, concluding with Galois Theory.


Constructs Are Inside and Outside Your Head

“Psychic” objects are phenomenal objects. Phenomenal objects are ones that fit our intuitions of what we think about when we think of “mental” things. Broadly, they are things like concepts, intentionality, intuition, attention, awareness, perception, experience, consciousness, etc. A construct is anything that is an intentional arrangement of elements. This means that any thought that you intentionally think about is a construct because it is an intentional arrangement of experiences, intuitions, concepts, and other things of that nature. This implies that whenever you imagine something, you are technically creating a construct. Metaphysically, there is a question of how this construct Read More


Evolution, Dynamical Systems and Markov Chains

In this post we present a high level introduction to evolution and to how we can use mathematical tools such as dynamical systems and Markov chains to model it. Questions about evolution then translate to questions about dynamical systems and Markov chains – some are easy to answer while others point to gaping holes in current techniques in algorithms and optimization.



Make Your Own Magical Rules

When people go about making their own magical “systems”, there tend to be two popular routes they take: making their own magical language without formalizing their ontology or they create random sigils. The problem, though, is that those two popular methods alone technically don’t create a magical system. A magical system is an abstraction comprised of a body of axioms, rules, and operations. If you were to look at classical and historical “magical systems”, you will see a formally articulated set of axioms and rules; an example of this is Western occultism. The problem with informally creating your own magical Read More


Magic is a Game

This is a topic a lot of people have been asking me about (I’ve been getting emails like crazy). When I have time, I’ll write a more formal posting, but this is a conversation I had on reddit on this. The conversation has been redacted and cleaned up for clarity and relevancy. I wrote: …I don’t have, nor really believe in, a Great Work. I’m working on an article on this, but, from my perspective, magic is a type of game. Trying to come up with a theory of magic is like trying to come up with a theory of Read More


What is a Psychic Construct?

This is a snippet of a conversation where I define psychic energy: …Any set of concepts and intentions that are extensions of those concepts can be treated as a tree and a tree is a type of graph. In other words, a semantic ontology can be created from a set of concepts where that ontology has a tree and that tree has a graph. Such a graph has an adjacency matrix and that adjacency matrix has a spectrum comprised of the eigenvalues of that matrix. The energy of the graph would be the sum of the absolute values of the Read More


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